Getting OBO-Edit Started

OBO-Edit is a Java application, so you will need to have Java on your computer. Most new computers come with some version of Java already installed.

1) Install Java 1.5 or higher

On Macs, the latest version of Java can be installed automatically by doing a system software update. On any other platform, download the appropriate Java Runtime Environment (JRE) binary from Oracle. (The latest version, as of 2011, is Java SE 6.)

2) Get OBO-Edit

Download the latest version of OBO-Edit from our SourceForge project at http://sourceforge.net/projects/geneontology

There will be several downloads to choose from (Windows, Mac, Linux/Unix).

3) Install and Launch OBO-Edit

5) Open an ontology

Go to the "File" menu and choose "Load Ontologies..." (shortcut is command-O). A box will appear that looks like this:

The ontology loader should show you the name of a sample ontology; just click "Ok" to load it.

You can download other ontologies from the Open Biomedical Ontologies site at http://www.obofoundry.org/.

This tutorial provides a good introduction to the use of OBO-Edit, especially for some of the more advanced features, such as the reasoner and cross-products.